CDS

Accession Number TCMCG016C15043
gbkey CDS
Protein Id OMO75909.1
Location complement(join(27108..27752,28070..28249,29157..29369,29484..29612,29695..29863,30057..30335,30595..30674,31350..31469,31555..31717,32490..32733,33230..33329,34211..34304,34735..34838,35512..35568,35686..35712))
Organism Corchorus capsularis
locus_tag CCACVL1_15991

Protein

Length 867aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01010931.1
Definition DNA topoisomerase, type IA [Corchorus capsularis]
Locus_tag CCACVL1_15991

EGGNOG-MAPPER Annotation

COG_category L
Description Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand
KEGG_TC -
KEGG_Module M00414        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03032        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K03165        [VIEW IN KEGG]
EC 5.99.1.2        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03440        [VIEW IN KEGG]
ko03460        [VIEW IN KEGG]
map03440        [VIEW IN KEGG]
map03460        [VIEW IN KEGG]
GOs GO:0000793        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003916        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006265        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007059        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016853        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0071103        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTCCTCCTCCCAAAGTTCTCATGGTGGCGGAGAAGCCTAGCATCGCTCTCTCCATTGCTTCCGTGCTCTCTCATGGCCAAATGTCAACAAGGAAGGGTAGTACAGAAGTGCACGAGTTCAATGGGATGTTTCTTGGCTTTCATGCCCATTATAAAGTGACATCAGTTATTGGACACGTATTCAGTGTAGATTTTCCAGCATCTTATCAAGATTGGAATACCACCAATCCTCTAGATCTATTTCAAGCACCAGTTATCAAGACAGAATCAAACCCAAAGGCCCATATTCCTAGACATTTAAGTCAAGAAGCTCGTGGTTGTGGTTATTTGGTATTATGGTTGGATTGTGATCGTGAAGGAGAGAACATTTGTTTTGAAGTCATTGAGTGTACTGGATTTCTTGTGAATGAAGCAAAGAAAAGGGTTTACCGTGCTAGGTTTTCTTCTGTGACTGAGAAGGACATCATGAAGGCTATGGACAACCTAGTGGACCCAAACAAACATGAGGCTCTAGCTGTGGATGCTCGGCAAGAGATAGATTTGAAAGTTGGTGTTGCATTTACCCGGTTTCAAACTAGTTATTTTCAAGGAAAATATGGGAATCTTGACGCCAGAGTTATCTCTTATGGTCCATGCCAAACCCCTACACTCGGGTTTTGTGTACAGCGCAATATGCAAATTAATACTTTCAAGCCAGAAAAGTTTTGGGCATTGCGTCCCTATATTATTCACAATGGTTATGAGCTTCAGCTAGAGTGGAAACGTCAAAAGTTGTTTGACATGGATGTTGCTATGATGTTTCAAAAGTTGGTTGCAGAGGATGGGATTCTTGAGGTAATTTATGTTTCAGAGAAACAGGAAACAAAAGGTCGGCCTTCTGGTCTAAACACAGTGAATCTCTTGAAGGTTGCTTCAAGTGCATTAGGCTTTGGACCTCAGACAGCCATGCAACTTGCTGAGCGCTTATATACACAAGGTTTCATAAGTTATCCGCGAACAGAAAGCACAGCATATCCCTCTTCATTTGACTTCAAAGGCACGCTTAATATACTAGCAAATAATCCAGTGTGGGGTGATTATGTCCGAGGATTGCTTGCTGAAGGTTATCATAAACCACGGTCGGGAACAGATGTTGGTGACCATCCTCCTATAACTCCAATGCGATCAGCAACTGAGGATATTCTTGGTAATGATGCGTGGAGATTATATCAGTATGTCTGTCAGCATTTTATAGGAACTGTGTCTCCTGACTGCAAATATGTGAGGAAGAAAGTAGAATTTTCAGTTAGTGGAGAATACTTCCATTGCATTGGGCATCATGTCAAAGTACAAGGATTTACATATATTATGCCATGGTTGGCCATAAATGAGAAAAATCTTCCTCAGTTTACAAAGGGGGAGAAAATTGAAGTTTCAAGAGTGGAGTTGTATGAGGGTGAGACTTCACCTCCTGATTATCTTAGCGAGAGTGAGCTGATTTCTCTGATGGAGAGGAATGGAATAGGCACAGATGCATCAATTCCTGTGCATATCAACAACATATGTGAGCGGAACTATGTACAGGTGCAAGCCGGTAGGAAATTGGTTCCAACGGCTTTAGGCATAACACTGATAAGAGGCTACCAGTGTATCGATCCAGATCTTTGTTTGCCAGACATTCGCAGTTTCATTGAGCATCAGATTACTTTGGTCGCAAAGGGTCAGGCCAATCATTCTCGTGTTGTGCAGCACGTTCTACAGCAATTCAAGCAAAAATTCAGTTATTTTGTTCAGCAGATTGAGAACATGGATGCCTTGTTCGAAGCACAATTCTCCCCATTAGCTGACTCAGGACGTCCTCTTAGTAAATGTGGTAAATGTTTGCGGTACATGAAATACATTTCTACACAACCCCCACGTTTGTTTTGTGGCATATGTGAGGAGGTTTACCACCTTCCTTCAAAGGGAACAATCAAGCTGTACAAGGAACTTACATGTCCTTTGGATAACTTCGAGCTGTTGATCTTGTCCATGCCTGGTCCAGAAGGCAAGTCTTTACCTCTCTGCCCATATTGTTATAATAGTCCTCCATTTGAAGGCATAGATACTCTCTTCGGTTCCACAAAGATAGGTAACACAGGGAAGTTGGGGAAAGGAGCAGGCATGCCATGCTTCCTCTGCCCACATCCCACATGTCGACACTCTCTGGTCGCGCAGGGAGTCTGTGCTTGCCCTGAATGTAGTGGAACACTCATTTTAGACCCAGTAAGTGCCCCAAAGTGGAGGCTTTATTGCAATAAATGCAATTGCCTTGTCTTACTCCCTGAAGGCGCCCATCGTATCACTACTACCCGAGAACGCTGTGCTGAATGTGATTCGACAATCATAGAGGTAGACTTCAATAAGAAAACAACTCCTTTGGAAGATGGAGCTACCTTGCATACTGGTTGCATTCTTTGTGATGAGTTACTCCATTCCCTTGTGGAGGTGAAGCATGGCAGATCATTTACTAGAGGAAGAGGTAGAGGAAGAGGAAGAGGAAGAGGTAGAGGTGGATATAAGGGGAGGGGACGTGCAGGTGGAAAGACTGTGGATCCTAAAATGAGTTTCCGAGATTTTTGA
Protein:  
MSPPPKVLMVAEKPSIALSIASVLSHGQMSTRKGSTEVHEFNGMFLGFHAHYKVTSVIGHVFSVDFPASYQDWNTTNPLDLFQAPVIKTESNPKAHIPRHLSQEARGCGYLVLWLDCDREGENICFEVIECTGFLVNEAKKRVYRARFSSVTEKDIMKAMDNLVDPNKHEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDARVISYGPCQTPTLGFCVQRNMQINTFKPEKFWALRPYIIHNGYELQLEWKRQKLFDMDVAMMFQKLVAEDGILEVIYVSEKQETKGRPSGLNTVNLLKVASSALGFGPQTAMQLAERLYTQGFISYPRTESTAYPSSFDFKGTLNILANNPVWGDYVRGLLAEGYHKPRSGTDVGDHPPITPMRSATEDILGNDAWRLYQYVCQHFIGTVSPDCKYVRKKVEFSVSGEYFHCIGHHVKVQGFTYIMPWLAINEKNLPQFTKGEKIEVSRVELYEGETSPPDYLSESELISLMERNGIGTDASIPVHINNICERNYVQVQAGRKLVPTALGITLIRGYQCIDPDLCLPDIRSFIEHQITLVAKGQANHSRVVQHVLQQFKQKFSYFVQQIENMDALFEAQFSPLADSGRPLSKCGKCLRYMKYISTQPPRLFCGICEEVYHLPSKGTIKLYKELTCPLDNFELLILSMPGPEGKSLPLCPYCYNSPPFEGIDTLFGSTKIGNTGKLGKGAGMPCFLCPHPTCRHSLVAQGVCACPECSGTLILDPVSAPKWRLYCNKCNCLVLLPEGAHRITTTRERCAECDSTIIEVDFNKKTTPLEDGATLHTGCILCDELLHSLVEVKHGRSFTRGRGRGRGRGRGRGGYKGRGRAGGKTVDPKMSFRDF